I Simplify Academic Writing with AI | Clinical Research Associate | Healthcare Biotechnologist | Scientific Writer | NUST

I share practical tips on how to ethically leverage A in your academic research and writing.

With new AI tools emerging almost every week, I’ve made it my mission to test, evaluate, and simplify them, so researchers can effectively leverage them without feeling overwhelmed.

About Me:
I hold a Master’s degree in Healthcare Biotechnology from the National University of Sciences and Technology (NUST), where my research focused on metallic nanoparticles for targeted drug delivery against breast cancer. I have published 10+ papers.
Previously, I served as a Clinical Research Associate, monitoring preclinical and clinical trials. Currently, I lead as an AI Solutions Lead at HigherEd+, where I’ve developed 20+ courses on the practical and ethical use of AI to enhance research productivity.

Follow me here on LinkedIn to receive regular guidance on the best AI tools for research.

I also send out a FREE newsletter packed with practical strategies to help you leverage AI in your research—straight to your inbox every week (https://lnkd.in/dTZesqZA)

ChatGPT Prompts for Revising & Editing Academic Writing



Prompt 1
Assume the role of a linguistic expert focusing on enhancing the coherence and flow of an academic paper in [insert field name]. Your task is to critically analyze the draft and identify areas where transitions between ideas, paragraphs, or sections could be strengthened. For each identified area, craft smooth and logical transitions that effectively bridge the identified gap, ensuring that the paper progresses more naturally. Ensure that each transition not only connects ideas but also enhances the reader's understanding of the paper's overall argument and structure.

Prompt 2
Assume the role of a meticulous proofreader with a strong background in [insert your field]. Your task is to scrutinize the given manuscript, focusing specifically on correcting grammatical errors and refining syntax to meet the highest standards of academic writing. Pay close attention to subject-verb agreement, tense consistency, and the proper use of academic tone and vocabulary. If the field’s conventions call for it, rectify any instances of passive voice where active voice would be more direct and impactful. Examine complex sentences to ensure clarity and coherence, breaking down overly complicated structures if necessary. Your goal is to produce a polished, error-free document that communicates ideas concisely, without detracting from the scholarly content and contributions of the work. Here is the academic manuscript: [Upload the manuscript or paste its contents here].process.

Prompt 3
My professor commented that my writing lacks a strong academic tone and sounds too informal. Review the several assignments for her class on [insert class name] which I have submitted this semester that have led to her having that impression of my writing. Review the text of each document carefully and suggest practical ways to make my writing more formal by adjusting word choice, sentence structure, and phrasing while keeping it clear and engaging. Provide before-and-after examples. In the future in this thread, I will upload assignments where I have tried to implement your feedback, and I need you to review what I upload then in order to tell me on a scale of 1 to 10 (1 = worst, 10 = best) how I have done in terms of following your feedback.

Want more?

Download FREE Prompt Library of 100 best ChatGPT prompts for academic researchers.
👉 https://lnkd.in/dgkS2Kxj
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Muhammad Irfan 🧬

50K+ | I simplify academic writing with AI | AI Solutions Lead | Healthcare Biotechnologist | Scientific Writer

Google Scholar just got better!!
(No more keyword search)


For years, Google Scholar has worked one way.

It pulled up papers based on keywords from your search query.

Now Scholar Labs does something completely different.

Scholar Labs does not just return papers.

It breaks your question apart, finds the core ideas inside it, and pulls studies that actually answer what you asked.

Then it explains how each study fits into the solution.

That turns hours of scanning PDFs into a few minutes of clarity.

Why this matters?
→ It helps you navigate complex, multi-layered questions.
→ It finds relationships across papers you would not see on your own.
→ It gives you a structured summary instead of a chaotic list of results.

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FREE ChatGPT Prompts for Grant Writing


Grant writing is time-consuming and complex

From finding the right funding opportunities to crafting compelling mission statements and detailed budgets.

I've compiled 6 powerful ChatGPT prompts that can help you:
➜ Refine your mission statements for clarity
➜ Develop comprehensive sustainability plans
➜ Build realistic project timelines and budgets
➜ Identify relevant funding opportunities faster
➜ Draft professional biosketches tailored to funders


Want the full library?
Download the FREE Prompt Library here:
👉 https://lnkd.in/dgkS2Kxj

OR

Comment "PDF" below and I'll send it directly to your DM! 📩

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Are you sure you're not missing any important papers in your literature review?


I thought mine was complete until one ResearchRabbit import exposed the gaps.

➙ I imported my entire Zotero library into ResearchRabbit.
    ↳ You can sign up for FREE (https://lnkd.in/dCDJZV2Y)

➙ The visual map loaded in seconds and showed how the papers are connected

➙ I selected the highly cited papers from my library and clicked on "Similar"

➙ Researchrabbit showed me 23 papers I had completely missed.

➙ Some were foundational, and many were recently published ones

➙ All of them were critical to the review I was building.

Keyword searches never revealed these papers

The visual map showed relationships I did not know to search for.

It takes minutes and can save weeks of revisions.

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Don't miss any Papers with Researchrabbit

Cheat Sheet for AI in Academic Research 
(2025 Edition)


Whether you're a researcher, student, or academic writer, this AI-powered cheat sheet is your new best friend. 

It’s packed with tools, custom GPTs, chatbots, and prompt frameworks to take your academic work to the next level. 

𝗧𝗼𝗽 𝗔𝗜 𝗧𝗼𝗼𝗹𝘀

➔ Julius AI
➔ SciSpace
➔ Consensus
➔ PaperPal 
➔ Litmaps
➔ Scite

𝗧𝗼𝗽 𝗖𝘂𝘀𝘁𝗼𝗺 𝗚𝗣𝗧𝘀 𝗳𝗼𝗿 𝗥𝗲𝘀𝗲𝗮𝗿𝗰𝗵𝗲𝗿𝘀
➔ Tutor Me – Academic help in STEM & humanities
➔ Excel AI – Analyze, clean & visualize data easily
➔ Scholar AI – Access Google Scholar, PubMed, JSTOR & more
➔ Academic Assistant Pro – Rewrite, polish & format documents
➔ Whimsical Diagrams – Convert concepts into flowcharts & mindmaps

𝗖𝗵𝗮𝘁𝗯𝗼𝘁𝘀 𝗧𝗼𝗽 𝗨𝘀𝗲 𝗖𝗮𝘀𝗲𝘀 
➔ ChatGPT – Brainstorm topics, outline ideas & refine drafts
➔ Claude – Draft full papers, convert to dashboards
➔ Perplexity – Answer research questions with real citations
➔ Gemini – Generate deep reports via search
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A literature review is not just a list of summarized articles 


Instead, it's a synthesis that shows how different sources 

→ Connect
→ Compare, and 
→ Contribute to your research topic

The Three Skills You Need: 
→ Summary - Recap key information 
→ Synthesis - Find connections between sources 
→ Evaluation - Assess the quality and relevance of research


Choose Your Organization Style:
→ Chronological - When timeline matters
→ Thematic - When organizing by topics/issues
→ Methodological - When research methods are the focus


Your literature review should showcase YOUR expertise by demonstrating how you understand the landscape of research in your field

Not just what others have said, but how it all fits together.

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How to Conduct an Effective Lit Review

Mohamed Suleiman Jama

Top AI Search Engines for Researchers in 2025



1. Semantic Scholar
→ AI-powered database with smart paper summaries and citation insights.

2. Consensus
→ Pulls evidence directly from peer-reviewed studies and summarizes findings.

3. Exa.ai
→ Real-time AI search with web crawling and structured research outputs.

4. Mapping Research
→ Creates visual maps of citation networks for faster literature exploration.

5. CiteSeerX
→ Open academic search engine using autonomous citation indexing.

6. Perplexity AI
→ LLM-driven search synthesizing real-time information with citations.

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8 FREE CustomGPTs for Academic Researchers



ChatGPT isn’t just a conversational tool


It’s a hub for free, specialized GPTs designed to elevate your research process


Check out some of the most powerful ones:

1. Academic Assistant Pro
↳ Perfectly polish your documents with ease


2. Presentation & Slides GPT
↳ Create stunning slides in minutes


3. SciSpace
↳ Unlock access to 287M+ research papers


4. Scholar AI
 ↳ Your gateway to academic databases


5. Diagrams
↳ Visualize complex concepts effortlessly


6. Scholar GPT
↳ Critically analyzes scientific manuscripts


7.  Consensus
↳ Your ultimate academic paper sidekick


8. Excel AI
↳ Simplify data analysis and crunch numbers like a pro

What’s the best part? These tools are free to use.


Are there any others that should be on this list? 

Let me know in the comments! 👇
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ChatGPT Prompts for Conducting Mock Peer Review


I’ve put together a set of powerful ChatGPT prompt templates designed to help researchers prepare mock peer reviews, craft response letters, and improve manuscripts before submission. 


Want the full library?
Download the FREE Prompt Library here:
👉 https://lnkd.in/dgkS2Kxj

OR

Or comment "PDF" and I will send it to your DM.
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I spent 3 hours chasing papers across PubMed & Google Scholar
⤷ Only to hit a paywall on the paper I actually needed.


That was the moment I realized how broken the research workflow still is.

Here is the shift that changed everything.

SciSpace just pushed updates that remove every slowdown that normally eats half my day.

I tested the new features during a lit review, and the difference was immediate.

 1. 𝗨𝗻𝗶𝗳𝗶𝗲𝗱 𝗥𝗲𝗿𝗮𝗻𝗸𝗲𝗱 𝗣𝗮𝗽𝗲𝗿 𝗧𝗮𝗯𝗹𝗲
 • One table. All databases. Zero tab switching.
 • SciSpace now merges results from Google Scholar, PubMed, ArXiv 
 • Results are ranked by a relevance score with an explanation for why each paper was selected.


 2. 𝗟𝗶𝗯𝗞𝗲𝘆 𝗟𝗶𝗯𝗿𝗮𝗿𝘆 𝗔𝗰𝗰𝗲𝘀𝘀 (𝗚𝗮𝗺𝗲-𝗰𝗵𝗮𝗻𝗴𝗶𝗻𝗴!)
 • Paywalled paper?
 • Just click → Access full-text via your institution.
 • No more dead ends, no more hunting for PDFs across sites.


 3. 𝗙𝗮𝘀𝘁𝗲𝗿 𝗗𝗮𝘁𝗮 𝗘𝘅𝘁𝗿𝗮𝗰𝘁𝗶𝗼𝗻
 • The Agent keeps running while you keep working.
 • Add/remove columns, filter papers, analyze results, pause/resume anytime


 4. 𝗚𝗼𝗼𝗴𝗹𝗲 𝗗𝗿𝗶𝘃𝗲 𝗜𝗻𝘁𝗲𝗴𝗿𝗮𝘁𝗶𝗼𝗻
 • Connect your Drive and let SciSpace automatically pull files for analysis.


The workflow finally feels like it was designed by someone who has done actual research.

Try SciSpace for yourself.

Sign up Now: https://lnkd.in/dqJPGqaw

Black Friday Deal Alert !!
Codes (Black Friday deal, limited-time offer):
IRBFD40 — Get 40% off on annual plan (Global) 
IRBFD30 — Get 30% off on annual plan (India)

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SciSpace just got better!

Create a first draft of your literature review using this one AI tool.


Here is the exact flow.

 1. Sign up and Login to AnswerThis
https://lnkd.in/dFvWj-Xj 

 2. Type your specific research question.

𝙀𝙭𝙖𝙢𝙥𝙡𝙚: 𝘞𝘳𝘪𝘵𝘦 𝘢 𝘭𝘪𝘵𝘦𝘳𝘢𝘵𝘶𝘳𝘦 𝘳𝘦𝘷𝘪𝘦𝘸 𝘰𝘯 𝘩𝘰𝘸 𝘋𝘕𝘈 𝘮𝘦𝘵𝘩𝘺𝘭𝘢𝘵𝘪𝘰𝘯 𝘥𝘺𝘴𝘳𝘦𝘨𝘶𝘭𝘢𝘵𝘪𝘰𝘯 𝘤𝘰𝘯𝘵𝘳𝘪𝘣𝘶𝘵𝘦𝘴 𝘵𝘰 𝘤𝘰𝘭𝘰𝘳𝘦𝘤𝘵𝘢𝘭 𝘤𝘢𝘯𝘤𝘦𝘳.


 3. Apply Filters
→ Choose publication types
→ Add the number of subpoints.
→ Filter journals from Q1 to Q4.
→ Set how many sections you want.
→ Pick a minimum citation threshold from 0 to 20.
→ Select databases like PubMed, OpenAlex, and arXiv.

4. AnswerThis generates a first draft
→ You get proper citations tied to every claim.
→ You get clean sections and subsections.
→ You get direct links to each source so you can verify instantly.


 • Save the important papers into your library.
 • Highlight key text and store it in your notebook.
 • Ask follow-up questions to dig deeper without restarting.


AnswerThis searches more than 200 million academic sources and builds paragraph-level citations you can trust.

It connects with Zotero and Mendeley so your references stay tidy as you write.
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6 Free Biorender alternatives


Create professional science visuals without spending on subscriptions.

Here is the list you need:

1. Open Science Art – Open-source scientific illustrations 
 ↳ https://lnkd.in/g22Ghhnp


2. SciDraw – Free graphics for your posters and slides.
 ↳ https://scidraw.io/


3. Bioicons – High-quality biological vector and icons.
 ↳ https://bioicons.com/


4. NIH BioART Source – Free visuals from the NIH archive.
 ↳ https://lnkd.in/gjTaW-kC


5. Smart Servier – Editable Medical illustrations.
 ↳ https://smart.servier.com/


6. Canva – Tons of templates and icons for science comm.
 ↳ https://www.canva.com/


Some Honorable Mentions

i. Phylopic – Silhouette icons of thousands of organisms.
 ↳ https://www.phylopic.org/

ii. Freepik – Search “science vectors” and thank me later.
 ↳ https://www.freepik.com/

iii. Reactome Icon Library – Clean biological pathways and icons.
 ↳ https://lnkd.in/dGmgyQXA

iv. Health Icons – Open-source, healthcare-focused icon library.
 ↳ https://healthicons.org/

v. Chemix – FREE Chemistry and Biology Diagram Editor
↳ https://chemix.org/

You don’t need a subscription to make beautiful science figures

You just need to know where to look

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Stop missing important papers in your literature review
⤷ (with this FREE AI tool)


You spent weeks on keyword searches 

only to realize you missed key papers?

I've been there.

Here is how Researchrabbit can help:

𝟭: 𝗦𝗺𝗮𝗿𝘁 𝗦𝗲𝗮𝗿𝗰𝗵 𝗦𝘁𝗿𝗮𝘁𝗲𝗴𝘆
→ Type your research keywords
→ Select 1-3 highly relevant seed papers
→ Click "Search" to discover the citation network

𝟮: 𝗘𝘅𝗽𝗹𝗼𝗿𝗲 𝘁𝗵𝗲 𝗟𝗶𝘁𝗲𝗿𝗮𝘁𝘂𝗿𝗲 𝗠𝗮𝗽
→ Set X-axis to "More citations"
→ Set Y-axis to "More recently published"

  • Top-left Papers = Classical/foundational papers (most cited)
  • Bottom-right Papers = Cutting-edge recent publications


𝗦𝘁𝗲𝗽 𝟯: 𝗕𝗮𝘀𝗶𝗰 𝗘𝘅𝗽𝗹𝗼𝗿𝗮𝘁𝗶𝗼𝗻 𝗙𝗲𝗮𝘁𝘂𝗿𝗲𝘀
→ Search References (what your papers cite)
→ Search Citations (who's citing your papers)
→ Find Similar articles automatically
→ Explore Authors' other published work


𝗦𝘁𝗲𝗽 𝟰: 𝗔𝗱𝘃𝗮𝗻𝗰𝗲𝗱 𝗦𝗲𝗮𝗿𝗰𝗵 𝗙𝗶𝗹𝘁𝗲𝗿𝘀 (𝗚𝗮𝗺𝗲-𝗰𝗵𝗮𝗻𝗴𝗲𝗿!)
→ Filter by specific keywords
→ Set publication date ranges
→ Select Journal Quality (Q1-Q4)
→ Choose specific Journal Indexes
→ Exclude retracted papers automatically


𝗦𝘁𝗲𝗽 𝟱: 𝗕𝘂𝗶𝗹𝗱 𝗬𝗼𝘂𝗿 𝗟𝗶𝗯𝗿𝗮𝗿𝘆
→ Create Collections for the main topic
→ Add relevant papers as you find them
→ Create separate Collections for subtopics

Sign up to ResearchRabbit for FREE:
https://lnkd.in/dCDJZV2Y


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How to Write a Research Synopsis?


I recently came across a brilliant guide that breaks down exactly how to craft a research synopsis that actually gets traction.

Key Takeaways:
⯈ Title & Abstract: Make it sharp, clear, and compelling.
⯈ Introduction: Define your niche and justify why it matters.
⯈ Literature Review: Go beyond summaries—be critical and selective.
⯈ Objectives & Hypotheses: Stay focused and measurable.
⯈ Methodology: Keep it grounded—and realistic.
⯈ Limitations: Acknowledge them upfront (reviewers will thank you).
⯈ Research Matrix: Map out your entire research design, step-by-step.
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How to Write a Research Synopsis

99% of People Prompt AI Wrong
   ↳ (Here's what they miss)


LLM prompts aren’t just “inputs.”

They’re puzzle pieces that tell the model how to think before it ever generates a single word.

And here’s the truth most people miss:

The quality of your prompt = the quality of your output.

To get results that outperform most AI users, master these 10 prompt engineering tricks:


1. Use Example-Based Instructions
 ↳ AI follows examples better than rules. 
 ↳ Show ideal inputs and outputs instead of writing long instructions.


2. Set a Clear Persona
 ↳ Skip vague roles like “act as an expert.” 
 ↳ Use specific personas such as:
“You are a tough but fair peer reviewer for a Q1 journal.”


3. Maximize Context
 ↳ Context = puzzle pieces.
 ↳ The more correct pieces, the clearer the final picture becomes.


4. Identify Gaps in Your Knowledge
 ↳ Paste your current understanding.
 ↳ Ask the AI to find flawed assumptions or weak reasoning.


5. Ask for Clarifying Questions
 ↳ Tell the model to ask you what it needs instead of guessing. 
 ↳ Better questions lead to better answers.


6. Use Meta-Prompting
 ↳ Not sure how to prompt?
 ↳ Ask the model to write the perfect prompt for you.


7. Demand a Confidence Score
 ↳ Reduce hallucinations by asking for a certainty level
 ↳ Add constraints like: “Only answer if you’re certain.”


8. Do a Voice Brain Dump
 ↳ Voice-rant your full thoughts. 
 ↳ AI excels at turning messy human input into structured outputs.


9. Add Negative Instructions
 ↳ Tell the model what not to do
 ↳ Clear “don’ts” sharpen output.


10. Remove the AI Accent
 ↳ AI loves predictable patterns. 
 ↳ Break them.
 ↳ Specify the exact writing style you want.

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How to Use ChatGPT Canvas for Research


ChatGPT Canvas is free and essential tool for drafting, refining, and organizing scholarly work.


Here’s how ChatGPT Canvas can elevate your academic writing:


1. Collaborative Editing
Work side-by-side with ChatGPT in a Google-Doc-style interface.
Request changes, refine arguments, and guide the writing process
All while keeping full ownership of your ideas.


2. Focused Edits
Highlight any section and give targeted instructions.
Canvas ensures every revision matches your tone and style


3. AI-Powered Suggestions
Ask ChatGPT to improve clarity, flow, structure, or impact.
Apply edits instantly to strengthen your writing.


4. Seamless Document Integration
Upload PDFs directly into Canvas.
Pull insights, integrate references, & refine content.

5. CustomGPTs Inside Canvas
Use specialized CustomGPTs to:
⤷ Strengthen arguments
⤷ Refine grammar
⤷ Enhance structure
⤷ Elevate academic tone

 It's like MS Word + ChatGPT in one tab.

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How to use ChatGPT Canvas for Research

My CRISPR cloning strategy just took 20 minutes instead of 7 Days

Here is exactly what happened.

I needed to knock out the BRCA1 gene in HEK293 cells using CRISPR-Cas9 and clone the gRNAs into a px459 vector.

The traditional process:
→ Literature search, design gRNAs using online tools 
→ Primer design, plan cloning strategy
→ Multiple tools, spreadsheets

What I actually did: 

One prompt to SciSpace BioMed Agent: 

"𝘐 𝘯𝘦𝘦𝘥 𝘵𝘰 𝘬𝘯𝘰𝘤𝘬 𝘰𝘶𝘵 𝘉𝘙𝘊𝘈1 𝘨𝘦𝘯𝘦 𝘪𝘯 𝘏𝘌𝘒293 𝘤𝘦𝘭𝘭𝘴. 𝘋𝘦𝘴𝘪𝘨𝘯 𝘨𝘙𝘕𝘈𝘴, 𝘱𝘳𝘪𝘮𝘦𝘳𝘴, 𝘢𝘯𝘥 𝘤𝘰𝘮𝘱𝘭𝘦𝘵𝘦 𝘤𝘭𝘰𝘯𝘪𝘯𝘨 𝘴𝘵𝘳𝘢𝘵𝘦𝘨𝘺 𝘧𝘰𝘳 𝘱𝘹459 𝘷𝘦𝘤𝘵𝘰𝘳."


20 minutes later, I had everything I needed.

→ A complete step-by-step cloning protocol
→ Sequencing primers for verification.
→ Forward and reverse primers 
→ Optimized gRNA sequences


I also needed a cloning strategy diagram for lab meeting.

One follow-up prompt & I got a publication-ready figure instantly.

No PowerPoint edits.

No BioRender subscription.

Just the output I needed.

This matters because speed is only one part of the win.

The real power comes from an assistant that understands 

Vector compatibility
Pulls best practices from recent literature
Flags issues before you touch a pipette



If you are spending hours designing primers or mapping cloning strategies, this is worth your attention.

Try the Biomed Agent Now: https://lnkd.in/g6i5ShzJ

Discount Codes:
Annual Plan: IRFBIO40 (40% off)
Monthly Plan: IRFBIO20 (20% off)


What's the most time-consuming step in your research workflow?

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AI Agent for Biomedical Researchers 

POV: Your supervisor explaining why they’re first author.


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Muhammad Irfan 🧬

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Muhammad Irfan's Linkedin Analytics

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